Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs8006297 chr14:74673763 A/G 0.000299 178 25.53 27.2 9.72 KM Plot
PCPG rs80065143 chr7:33705303 G/T 9.83E-8 178 25.4 25.43 19.87 KM Plot
PCPG rs80092540 chr7:33702808 T/C 1.12E-7 177 25.28 25.43 19.87 KM Plot
PCPG rs80154534 chr7:1145046 G/C 1.9E-7 170 25.97 23.57 19.87 KM Plot
PCPG rs80158686 chr8:121393944 A/G 5.09E-6 176 26.88 25 19.87 KM Plot
PCPG rs80194334 chr10:131981110 C/T 0 178 25.6 24.23 3.17 KM Plot
PCPG rs80206916 chr7:66336322 T/A 0.000217 178 24.7 29.57 33.17 KM Plot
PCPG rs80209774 chr5:171530575 G/A 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs80212261 chr7:1114012 C/T 0.000233 176 25.87 24.5 49.58 KM Plot
PCPG rs80220635 chr16:90026049 C/G 1.26E-8 172 25.67 20.2 6.62 KM Plot
PCPG rs80250664 chr2:118699777 T/C 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs80256390 chr3:53099594 C/T 7.69E-6 175 25.08 26.57 11.78 KM Plot
PCPG rs80275153 chr15:39735394 A/T 0.000428 178 25 25.67 26.33 KM Plot
PCPG rs8028554 chr15:30973076 A/G 1.11E-16 174 26.58 21.9 2.12 KM Plot
PCPG rs8029458 chr15:91604374 T/G 8.17E-5 170 13.28 27.23 24.52 KM Plot